<logpath> within the <debug> section specifies the directory where to store debugging log files (usually .html files, one per session/thread). These are for having a detailed (technical) look at what happens within a sync session, including, but not limited to script debugging. Use the <enable...> and <disable option="xxx"> directives to control what is to be show in the debug logs.
On the other hand,
<logfile> within the <client> section specifies a file to write one line of data (useful numbers for statistics) per sync session/data store. Using <logformat> and <loglabels>, the actual content of this file can be configured.
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At the end of the day, I'd like to just setup session logging so that I can see what is going on during a sync.
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The sample config file is set up for session logging already, so just setting <logpath> to a writeable directory should be sufficient to start with.